Library Sizes ranged between 45,380,672 and 105,067,734 reads.
Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.
Summary of FastQC flags for each parameter
Heatmap showing mean base qualities for each library
Heatmap showing mean sequence qualities for each library
Heatmap of summed base distributions along each read
GC Content Heatmap normalised to theoretical GC content in the Hsapiens Transcriptome
GC Content Distributions for all reads showing theoretical GC content from the Hsapiens Transcriptome
Universal Adapter Content
Total overrepresented sequences for each library
## Overrepresented_sequences missing from GLL50_D_S13Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL50_V_S38Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL53_V_S52Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL56_D_S25Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL56_V_S7Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL59_D_S19Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL59_V_S72Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL63_D_S15Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL63_V_S8Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL65_D_S48Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL65_V_S69Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL67_D_S22Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL67_V_S74Aligned.sortedByCoord.out.bam
## Overrepresented_sequences missing from GLL69_V_S39Aligned.sortedByCoord.out.bam
R version 4.0.0 (2020-04-24)
Platform: x86_64-apple-darwin17.0 (64-bit)
locale: en_AU.UTF-8||en_AU.UTF-8||en_AU.UTF-8||C||en_AU.UTF-8||en_AU.UTF-8
attached base packages: parallel, stats, graphics, grDevices, utils, datasets, methods and base
other attached packages: pander(v.0.6.3), DT(v.0.13), scales(v.1.1.0), readr(v.1.3.1), dplyr(v.0.8.5), stringr(v.1.4.0), magrittr(v.1.5), ngsReports(v.1.4.0), tibble(v.3.0.1), ggplot2(v.3.3.0) and BiocGenerics(v.0.34.0)
loaded via a namespace (and not attached): Biobase(v.2.48.0), ggdendro(v.0.1-20), httr(v.1.4.1), tidyr(v.1.0.3), jsonlite(v.1.6.1), viridisLite(v.0.3.0), assertthat(v.0.2.1), highr(v.0.8), stats4(v.4.0.0), latticeExtra(v.0.6-29), GenomeInfoDbData(v.1.2.3), Rsamtools(v.2.4.0), yaml(v.2.2.1), ggrepel(v.0.8.2), pillar(v.1.4.4), lattice(v.0.20-41), glue(v.1.4.0), digest(v.0.6.25), RColorBrewer(v.1.1-2), GenomicRanges(v.1.40.0), XVector(v.0.28.0), colorspace(v.1.4-1), htmltools(v.0.4.0), Matrix(v.1.2-18), plyr(v.1.8.6), FactoMineR(v.2.3), pkgconfig(v.2.0.3), ShortRead(v.1.46.0), zlibbioc(v.1.34.0), purrr(v.0.3.4), jpeg(v.0.1-8.1), BiocParallel(v.1.22.0), farver(v.2.0.3), generics(v.0.0.2), IRanges(v.2.22.1), ellipsis(v.0.3.0), withr(v.2.2.0), SummarizedExperiment(v.1.18.1), lazyeval(v.0.2.2), crayon(v.1.3.4), evaluate(v.0.14), MASS(v.7.3-51.6), hwriter(v.1.3.2), forcats(v.0.5.0), truncnorm(v.1.0-8), Cairo(v.1.5-12), tools(v.4.0.0), data.table(v.1.12.8), hms(v.0.5.3), lifecycle(v.0.2.0), matrixStats(v.0.56.0), plotly(v.4.9.2.1), S4Vectors(v.0.26.0), munsell(v.0.5.0), cluster(v.2.1.0), DelayedArray(v.0.14.0), Biostrings(v.2.56.0), flashClust(v.1.01-2), compiler(v.4.0.0), GenomeInfoDb(v.1.24.0), rlang(v.0.4.6), grid(v.4.0.0), RCurl(v.1.98-1.2), htmlwidgets(v.1.5.1), crosstalk(v.1.1.0.1), leaps(v.3.1), labeling(v.0.3), bitops(v.1.0-6), rmarkdown(v.2.1), gtable(v.0.3.0), reshape2(v.1.4.4), R6(v.2.4.1), GenomicAlignments(v.1.24.0), zoo(v.1.8-8), lubridate(v.1.7.8), knitr(v.1.28), stringi(v.1.4.6), Rcpp(v.1.0.4.6), png(v.0.1-7), vctrs(v.0.2.4), scatterplot3d(v.0.3-41), tidyselect(v.1.0.0) and xfun(v.0.13)